You are here: FoswikiMITOMAP WebLocusCytB (15 Sep 2015, UnknownUser)

The Amino Acids of mtCytB (14747-15887)

 
          14755       14764       14773       14782       14791       14800
5'  ATG ACC CCA ATA CGC AAA ACT AAC CCC CTA ATA AAA TTA ATT AAC CAC TCA TTC
    --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---
     M   T   P   M   R   K   T   N   P   L   M   K   L   I   N   H   S   F

          14809       14818       14827       14836       14845       14854
    ATC GAC CTC CCC ACC CCA TCC AAC ATC TCC GCA TGA TGA AAC TTC GGC TCA CTC
    --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---
     I   D   L   P   T   P   S   N   I   S   A   W   W   N   F   G   S   L

          14863       14872       14881       14890       14899       14908
    CTT GGC GCC TGC CTG ATC CTC CAA ATC ACC ACA GGA CTA TTC CTA GCC ATG CAC
    --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---
     L   G   A   C   L   I   L   Q   I   T   T   G   L   F   L   A   M   H

          14917       14926       14935       14944       14953       14962
    TAC TCA CCA GAC GCC TCA ACC GCC TTT TCA TCA ATC GCC CAC ATC ACT CGA GAC
    --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---
     Y   S   P   D   A   S   T   A   F   S   S   I   A   H   I   T   R   D

          14971       14980       14989       14998       15007       15016
    GTA AAT TAT GGC TGA ATC ATC CGC TAC CTT CAC GCC AAT GGC GCC TCA ATA TTC
    --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---
     V   N   Y   G   W   I   I   R   Y   L   H   A   N   G   A   S   M   F

          15025       15034       15043       15052       15061       15070
    TTT ATC TGC CTC TTC CTA CAC ATC GGG CGA GGC CTA TAT TAC GGA TCA TTT CTC
    --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---
     F   I   C   L   F   L   H   I   G   R   G   L   Y   Y   G   S   F   L

          15079       15088       15097       15106       15115       15124
    TAC TCA GAA ACC TGA AAC ATC GGC ATT ATC CTC CTG CTT GCA ACT ATA GCA ACA
    --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---
     Y   S   E   T   W   N   I   G   I   I   L   L   L   A   T   M   A   T

          15133       15142       15151       15160       15169       15178
    GCC TTC ATA GGC TAT GTC CTC CCG TGA GGC CAA ATA TCA TTC TGA GGG GCC ACA
    --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---
     A   F   M   G   Y   V   L   P   W   G   Q   M   S   F   W   G   A   T

          15187       15196       15205       15214       15223       15232
    GTA ATT ACA AAC TTA CTA TCC GCC ATC CCA TAC ATT GGG ACA GAC CTA GTT CAA
    --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---
     V   I   T   N   L   L   S   A   I   P   Y   I   G   T   D   L   V   Q

          15241       15250       15259       15268       15277       15286
    TGA ATC TGA GGA GGC TAC TCA GTA GAC AGT CCC ACC CTC ACA CGA TTC TTT ACC
    --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---
     W   I   W   G   G   Y   S   V   D   S   P   T   L   T   R   F   F   T

          15295       15304       15313       15322       15331       15340
    TTT CAC TTC ATC TTG CCC TTC ATT ATT GCA GCC CTA GCA ACA CTC CAC CTC CTA
    --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---
     F   H   F   I   L   P   F   I   I   A   A   L   A   T   L   H   L   L

          15349       15358       15367       15376       15385       15394
    TTC TTG CAC GAA ACG GGA TCA AAC AAC CCC CTA GGA ATC ACC TCC CAT TCC GAT
    --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---
     F   L   H   E   T   G   S   N   N   P   L   G   I   T   S   H   S   D

          15403       15412       15421       15430       15439       15448
    AAA ATC ACC TTC CAC CCT TAC TAC ACA ATC AAA GAC GCC CTC GGC TTA CTT CTC
    --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---
     K   I   T   F   H   P   Y   Y   T   I   K   D   A   L   G   L   L   L

          15457       15466       15475       15484       15493       15502
    TTC CTT CTC TCC TTA ATG ACA TTA ACA CTA TTC TCA CCA GAC CTC CTA GGC GAC
    --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---
     F   L   L   S   L   M   T   L   T   L   F   S   P   D   L   L   G   D

          15511       15520       15529       15538       15547       15556
    CCA GAC AAT TAT ACC CTA GCC AAC CCC TTA AAC ACC CCT CCC CAC ATC AAG CCC
    --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---
     P   D   N   Y   T   L   A   N   P   L   N   T   P   P   H   I   K   P

          15565       15574       15583       15592       15601       15610
    GAA TGA TAT TTC CTA TTC GCC TAC ACA ATT CTC CGA TCC GTC CCT AAC AAA CTA
    --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---
     E   W   Y   F   L   F   A   Y   T   I   L   R   S   V   P   N   K   L

          15619       15628       15637       15646       15655       15664
    GGA GGC GTC CTT GCC CTA TTA CTA TCC ATC CTC ATC CTA GCA ATA ATC CCC ATC
    --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---
     G   G   V   L   A   L   L   L   S   I   L   I   L   A   M   I   P   I

          15673       15682       15691       15700       15709       15718
    CTC CAT ATA TCC AAA CAA CAA AGC ATA ATA TTT CGC CCA CTA AGC CAA TCA CTT
    --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---
     L   H   M   S   K   Q   Q   S   M   M   F   R   P   L   S   Q   S   L

          15727       15736       15745       15754       15763       15772
    TAT TGA CTC CTA GCC GCA GAC CTC CTC ATT CTA ACC TGA ATC GGA GGA CAA CCA
    --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---
     Y   W   L   L   A   A   D   L   L   I   L   T   W   I   G   G   Q   P

          15781       15790       15799       15808       15817       15826
    GTA AGC TAC CCT TTT ACC ATC ATT GGA CAA GTA GCA TCC GTA CTA TAC TTC ACA
    --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---
     V   S   Y   P   F   T   I   I   G   Q   V   A   S   V   L   Y   F   T

          15835       15844       15853       15862       15871       15880
    ACA ATC CTA ATC CTA ATA CCA ACT ATC TCC CTA ATT GAA AAC AAA ATA CTC AAA
    --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---
     T   I   L   I   L   M   P   T   I   S   L   I   E   N   K   M   L   K


    TGG GCC T 3'
    --- --- -
     W   A

Nucleotide 14766C represents a corrected Cambridge sequence error per Andrews etal (1999).

Amino Acid Distribution in human mtCytB

Cytb (14747-15887) AA

#

%

Ala (A)

25

6.6%

Arg (R)

7

1.8%

Asn (N)

15

3.9%

Asp (D)

11

2.9%

Cys (C)

2

0.5%

Gln (Q)

8

2.1%

Glu (E)

4

1.1%

Gly (G)

24

6.3%

His (H)

12

3.2%

Ile (I)

39

10.3%

End (*)

0

0.0%

Leu1 (L)(UUA/G)

9

2.4%

Leu2 (L)(CUN)

55

14.5%

Lys (K)

9

2.4%

Met (M)

15

3.9%

Phe (F)

24

6.3%

Pro (p)

23

6.1%

Ser1 (S)(UCN)

25

6.6%

Ser2 (S)(AGU/C)

4

1.1%

Thr (T)

30

7.9%

Trp (W)

12

3.2%

Tyr (Y)

17

4.5%

Val (V)

10

2.6%

Cytb Total AA

380

100.0%

Acidic (Asp + Glu)

15

3.9%

Basic (Arg + Lys)

16

4.2%

Aromatic (Phe + Trp + Tyr)

53

13.9%

Hydrophobic (Aromatic + Ile + Leu + Met + Val)

181

47.6%

Molecular Wt

42737

Average pI

6.09



Amino acid detail: ATP6, ATP8, ND1, ND2, ND3, ND4, ND4L, ND5, ND6, CO1, CO2, CO3, CytB.

Go to the Human Mitochondrial Genetic Code.
Topic revision: r1 - 15 Sep 2015, UnknownUser
This site is powered by FoswikiCopyright © by the contributing authors. All material on this collaboration platform is the property of the contributing authors.
Ideas, requests, problems regarding Foswiki? Send feedback