MITOMAP: Mitochondrial DNA Function Locations

Last Edited: May 09, 2019

Map Locus	Starting	Ending	Shorthand	Description	Reference
MT-3H	384	391	CR:mt3H	mt3 H-strand control element	1
MT-3L	16499	16506	CR:mt3L	L-strand control element	1
MT-4H	371	379	CR:mt4H	mt4 H-strand control element	1
MT-5	16194	16208	CR:mt5	control element	1
MT-7SDNA	16106	191	CR:7S-like	7S DNA	6
MT-ATP6	8527	9207	ATPase6	ATP synthase F0 subunit 6	1
MT-ATP8	8366	8572	ATPase8	ATP synthase F0 subunit 8	2
MT-ATT	15925	499	ATT	membrane attachment site	2
MT-CO1	5904	7445	COI	Cytochrome c oxidase subunit I	2
MT-CO2	7586	8269	COII	Cytochrome c oxidase subunit II	1
MT-CO3	9207	9990	COIII	Cytochrome c oxidase subunit III	1
MT-CR	16024	576	CR:Control Region	entire Control Region (including displacement loop)	4
MT-CSB1	213	235	CR:CSB1	Conserved sequence block 1	2
MT-CSB2	299	315	CR:CSB2	Conserved sequence block 2	3
MT-CSB3	346	363	CR:CSB3	Conserved sequence block 3	2
MT-CYB	14747	15887	Cytb	Cytochrome b	1
MT-HPR	317	321	CR:HPR	replication primer	2
MT-HSP1	545	567	CR:PH1	Major H-strand promoter	5
MT-HSP2	645	645	PH2	Minor H-strand promoter	3
MT-Hum	2633	2705	Humanin	Humanin peptide	3
MT-HV1	16024	16383	CR:HVS1/HV1	Hypervariable segment 1 [classic:16024-16365]	3
MT-HV2	57	372	CR:HVS2	Hypervariable segment 2 [classic:73-340 ]	3
MT-HV3	438	574	CR:HVS3	Hypervariable segment 3	2
MT-LSP	392	435	CR:PL	L-strand promoter	5
MT-NC1	3305	3306	NC1	non-coding nucleotides	0
MT-NC10	15954	15955	NC10	non-coding nucleotides	0
MT-NC2	4401	4401	NC2	non-coding nucleotides	0
MT-NC3	5580	5586	NC3	non-coding nucleotides	1
MT-NC4	5656	5656	NC4	non-coding nucleotides	1
MT-NC5	5892	5903	NC5	non-coding nucleotides	0
MT-NC6	7515	7517	NC6	non-coding nucleotides	0
MT-NC7	8270	8294	NC7	non-coding nucleotides	1
MT-NC8	8365	8365	NC8	non-coding nucleotide	0
MT-NC9	14743	14746	NC9	non-coding nucleotides	0
MT-ND1	3307	4262	ND1	NADH Dehydrogenase subunit 1	3
MT-ND2	4470	5511	ND2	NADH dehydrogenase subunit 2	2
MT-ND3	10059	10404	ND3	NADH dehydrogenase subunit 3	2
MT-ND4	10760	12137	ND4	NADH dehydrogenase subunit 4	2
MT-ND4L	10470	10766	ND4L	NADH dehydrogenase subunit 4L	2
MT-ND5	12337	14148	ND5	NADH dehydrogenase subunit 5	2
MT-ND6	14149	14673	ND6	NADH dehydrogenase subunit 6	2
MT-OHR	110	441	CR:OH	H-strand origins	4
MT-OHR57	57	57	CR:OH57	H-strand origin	1
MT-OLR	5721	5798	OL	L-strand origin	5
MT-RNR1	648	1601	12S	12S ribosomal RNA	2
MT-RNR2	1671	3229	16S	16S ribosomal RNA	2
MT-RNR3	3206	3229	-	5S-like sequence	1
MT-TA	5587	5655	A	tRNA alanine	1
MT-TAS	16157	16172	CR:TAS	termination-associated sequence	2
MT-TAS2	16081	16138	CR:TAS2	extended termination-associated sequence	2
MT-TC	5761	5826	C	tRNA cysteine	1
MT-TD	7518	7585	D	tRNA aspartic acid	1
MT-TE	14674	14742	E	tRNA glutamic acid	1
MT-TER	3229	3256	-	Transcription terminator	4
MT-TF	577	647	F	tRNA phenylalanine	1
MT-TFH	523	550	CR:TFH	mtTF1 binding site	1
MT-TFL	418	445	CR:mtTF1	mtTF1 binding site	1
MT-TFX	233	260	CR:TFX	mtTF1 binding site	1
MT-TFY	276	303	CR:TFY	mtTF1 binding site	1
MT-TG	9991	10058	G	tRNA glycine	1
MT-TH	12138	12206	H	tRNA histidine	1
MT-TI	4263	4331	I	tRNA isoleucine	1
MT-TK	8295	8364	K	tRNA lysine	1
MT-TL1	3230	3304	L(UUA/G)	tRNA leucine 1	1
MT-TL2	12266	12336	L(CUN)	tRNA leucine2	1
MT-TM	4402	4469	M	tRNA methionine	1
MT-TN	5657	5729	N	tRNA asparagine	1
MT-TP	15956	16023	P	tRNA proline	1
MT-TQ	4329	4400	Q	tRNA glutamine	1
MT-TR	10405	10469	R	tRNA arginine	1
MT-TS1	7446	7514	S(UCN)	tRNA serine 1	2
MT-TS2	12207	12265	S(AGY)	tRNA serine2	1
MT-TT	15888	15953	T	tRNA threonine	1
MT-TV	1602	1670	V	tRNA valine	1
MT-TW	5512	5579	W	tRNA tryptophan	1
MT-TY	5826	5891	Y	tRNA tyrosine	1

Note: Locus names are the official designations delineated by the given nucleotide numbers. The map positions correspond to the nucleotide pair(np) numbers determined from the DNA sequence.

Notes: mtTF1=mitochondrial transcription factor, Y=either pyrimidine, N=any base.

H-strand replication origin positions have been identified at np 110, 147, 169, 191, 219, 310, 441.

L-strand promoter positions have been identified at np 407, 392-435.

H-strand promoter positions have been identified at np 559-561.

L-strand replication origin positions have been identified at np 5721-5781, 5761, 5799.