MITOMAP: Mitochondrial DNA Function Locations
Last Edited: May 09, 2019
Map Locus |
Starting |
Ending |
Shorthand |
Description |
Reference |
MT-3H |
384 |
391 |
CR:mt3H |
mt3 H-strand control element |
1 |
MT-3L |
16499 |
16506 |
CR:mt3L |
L-strand control element |
1 |
MT-4H |
371 |
379 |
CR:mt4H |
mt4 H-strand control element |
1 |
MT-5 |
16194 |
16208 |
CR:mt5 |
control element |
1 |
MT-7SDNA |
16106 |
191 |
CR:7S-like |
7S DNA |
6 |
MT-ATP6 |
8527 |
9207 |
ATPase6 |
ATP synthase F0 subunit 6 |
1 |
MT-ATP8 |
8366 |
8572 |
ATPase8 |
ATP synthase F0 subunit 8 |
2 |
MT-ATT |
15925 |
499 |
ATT |
membrane attachment site |
2 |
MT-CO1 |
5904 |
7445 |
COI |
Cytochrome c oxidase subunit I |
2 |
MT-CO2 |
7586 |
8269 |
COII |
Cytochrome c oxidase subunit II |
1 |
MT-CO3 |
9207 |
9990 |
COIII |
Cytochrome c oxidase subunit III |
1 |
MT-CR |
16024 |
576 |
CR:Control Region |
entire Control Region (including displacement loop) |
4 |
MT-CSB1 |
213 |
235 |
CR:CSB1 |
Conserved sequence block 1 |
2 |
MT-CSB2 |
299 |
315 |
CR:CSB2 |
Conserved sequence block 2 |
3 |
MT-CSB3 |
346 |
363 |
CR:CSB3 |
Conserved sequence block 3 |
2 |
MT-CYB |
14747 |
15887 |
Cytb |
Cytochrome b |
1 |
MT-HPR |
317 |
321 |
CR:HPR |
replication primer |
2 |
MT-HSP1 |
545 |
567 |
CR:PH1 |
Major H-strand promoter |
5 |
MT-HSP2 |
645 |
645 |
PH2 |
Minor H-strand promoter |
3 |
MT-Hum |
2633 |
2705 |
Humanin |
Humanin peptide |
3 |
MT-HV1 |
16024 |
16383 |
CR:HVS1/HV1 |
Hypervariable segment 1 [classic:16024-16365] |
3 |
MT-HV2 |
57 |
372 |
CR:HVS2 |
Hypervariable segment 2 [classic:73-340 ] |
3 |
MT-HV3 |
438 |
574 |
CR:HVS3 |
Hypervariable segment 3 |
2 |
MT-LSP |
392 |
435 |
CR:PL |
L-strand promoter |
5 |
MT-NC1 |
3305 |
3306 |
NC1 |
non-coding nucleotides |
0 |
MT-NC10 |
15954 |
15955 |
NC10 |
non-coding nucleotides |
0 |
MT-NC2 |
4401 |
4401 |
NC2 |
non-coding nucleotides |
0 |
MT-NC3 |
5580 |
5586 |
NC3 |
non-coding nucleotides |
1 |
MT-NC4 |
5656 |
5656 |
NC4 |
non-coding nucleotides |
1 |
MT-NC5 |
5892 |
5903 |
NC5 |
non-coding nucleotides |
0 |
MT-NC6 |
7515 |
7517 |
NC6 |
non-coding nucleotides |
0 |
MT-NC7 |
8270 |
8294 |
NC7 |
non-coding nucleotides |
1 |
MT-NC8 |
8365 |
8365 |
NC8 |
non-coding nucleotide |
0 |
MT-NC9 |
14743 |
14746 |
NC9 |
non-coding nucleotides |
0 |
MT-ND1 |
3307 |
4262 |
ND1 |
NADH Dehydrogenase subunit 1 |
3 |
MT-ND2 |
4470 |
5511 |
ND2 |
NADH dehydrogenase subunit 2 |
2 |
MT-ND3 |
10059 |
10404 |
ND3 |
NADH dehydrogenase subunit 3 |
2 |
MT-ND4 |
10760 |
12137 |
ND4 |
NADH dehydrogenase subunit 4 |
2 |
MT-ND4L |
10470 |
10766 |
ND4L |
NADH dehydrogenase subunit 4L |
2 |
MT-ND5 |
12337 |
14148 |
ND5 |
NADH dehydrogenase subunit 5 |
2 |
MT-ND6 |
14149 |
14673 |
ND6 |
NADH dehydrogenase subunit 6 |
2 |
MT-OHR |
110 |
441 |
CR:OH |
H-strand origins |
4 |
MT-OHR57 |
57 |
57 |
CR:OH57 |
H-strand origin |
1 |
MT-OLR |
5721 |
5798 |
OL |
L-strand origin |
5 |
MT-RNR1 |
648 |
1601 |
12S |
12S ribosomal RNA |
2 |
MT-RNR2 |
1671 |
3229 |
16S |
16S ribosomal RNA |
2 |
MT-RNR3 |
3206 |
3229 |
- |
5S-like sequence |
1 |
MT-TA |
5587 |
5655 |
A |
tRNA alanine |
1 |
MT-TAS |
16157 |
16172 |
CR:TAS |
termination-associated sequence |
2 |
MT-TAS2 |
16081 |
16138 |
CR:TAS2 |
extended termination-associated sequence |
2 |
MT-TC |
5761 |
5826 |
C |
tRNA cysteine |
1 |
MT-TD |
7518 |
7585 |
D |
tRNA aspartic acid |
1 |
MT-TE |
14674 |
14742 |
E |
tRNA glutamic acid |
1 |
MT-TER |
3229 |
3256 |
- |
Transcription terminator |
4 |
MT-TF |
577 |
647 |
F |
tRNA phenylalanine |
1 |
MT-TFH |
523 |
550 |
CR:TFH |
mtTF1 binding site |
1 |
MT-TFL |
418 |
445 |
CR:mtTF1 |
mtTF1 binding site |
1 |
MT-TFX |
233 |
260 |
CR:TFX |
mtTF1 binding site |
1 |
MT-TFY |
276 |
303 |
CR:TFY |
mtTF1 binding site |
1 |
MT-TG |
9991 |
10058 |
G |
tRNA glycine |
1 |
MT-TH |
12138 |
12206 |
H |
tRNA histidine |
1 |
MT-TI |
4263 |
4331 |
I |
tRNA isoleucine |
1 |
MT-TK |
8295 |
8364 |
K |
tRNA lysine |
1 |
MT-TL1 |
3230 |
3304 |
L(UUA/G) |
tRNA leucine 1 |
1 |
MT-TL2 |
12266 |
12336 |
L(CUN) |
tRNA leucine2 |
1 |
MT-TM |
4402 |
4469 |
M |
tRNA methionine |
1 |
MT-TN |
5657 |
5729 |
N |
tRNA asparagine |
1 |
MT-TP |
15956 |
16023 |
P |
tRNA proline |
1 |
MT-TQ |
4329 |
4400 |
Q |
tRNA glutamine |
1 |
MT-TR |
10405 |
10469 |
R |
tRNA arginine |
1 |
MT-TS1 |
7446 |
7514 |
S(UCN) |
tRNA serine 1 |
2 |
MT-TS2 |
12207 |
12265 |
S(AGY) |
tRNA serine2 |
1 |
MT-TT |
15888 |
15953 |
T |
tRNA threonine |
1 |
MT-TV |
1602 |
1670 |
V |
tRNA valine |
1 |
MT-TW |
5512 |
5579 |
W |
tRNA tryptophan |
1 |
MT-TY |
5826 |
5891 |
Y |
tRNA tyrosine |
1 |
Note:
Locus names are the official designations delineated by the given nucleotide numbers. The map positions correspond to the nucleotide pair(np) numbers determined from the DNA sequence.
Notes: mtTF1=mitochondrial transcription factor, Y=either pyrimidine, N=any base.
H-strand replication origin positions have been identified at np 110, 147, 169, 191, 219, 310, 441.
L-strand promoter positions have been identified at np 407, 392-435.
H-strand promoter positions have been identified at np 559-561.
L-strand replication origin positions have been identified at np 5721-5781, 5761, 5799.