MITOMAP: Reported mtDNA Deletions

Last Edited: Nov 30, 2017

Deletion Junction (nt:nt) Deletion Size (bp) Repeat Location (nt) Repeat Type More Info
105:112 -6 - NR 5
470:5152 -4681 471-483/5152-5163 D, 12/13 1
502:5443 -4939 504-512/5443-5451 D, 8/9 1
547:4443 -3895 536-548/4430-4442 D, 13/13 7
1836:5447 -3610 1837-1840/5447-5451 D, 4/4 1
3173:14161 -10987 3166-3173/14154-14161 D, 8/8 1
3323:3588 -264 3330-3334/3597-3601 D, 5/5 1
4398:14822 -10423 4389-4398/14812-12821 D, 10/10 3
5786:13923 -8136 - NR 1
5793:12767 -6973 5786-5792/12757-12763 D, 6/7 1
5835:12661 -6825 5836-5843/12666-12673 D, 6/8 1
6023:14424 -8400 6023/14423 D, 1/1 1
6074:9179 -3104 6080-6083/9181-9184 D, 4/4 1
6075:13799 -7723 6076-6084/13799-13807 D, 9/9 1
6226:13456 -7229 6218-6226/13447-13455 D, 9/9 1
6238:14103 -7864 6235-6238/14099-14102 D, 4/4 1
6325:13989 -7663 6326-6341/13889-14004 D, 16/17 2
6329:13994 -7664 6325-6340/13989-14005 D, 17/18 1
6330:13994 -7663 6331-6341/13994-14004 D, 11/11 2
6380:14096 -7715 6369-6374/14099-14104 D, 6/6 1
6465:14135 -7669 6466-6476/14135-14145 D, 11/11 1
7193:14596 -7402 7169-7173/14609-14613 I, 5/5 1
7438:13476 -6037 7439/13476 D, 1/1 1
7449:15926 -8476 - NR 1
7491:11004 -3512 7484-7491/10996-11003 D, 8/8 2
7493:12762 -5268 7491-7493/12759-12761 D, 3/3 1
7501:14428 -6926 7502-7506/14428-14432 D, 5/5 1
7635:15440 -7804 7627-7630/15432-15435 D, 4/4 1
7669:15437 -7767 7662-7669/15429-15436 D, 8/8 2
7697:12364 -4666 - NR 2
7777:13794 -6016 7780-7783/13796-13799 D, 4/4 1
7808:14799 -6990 7809-7814/14799-14804 D, 6/6 1
7815:15381 -7565 7816-7823/15381-15388 D, 8/8 1
7829:14135 -6305 7824-7829/14129-14134 D, 6/6 1
7841:13905 -6063 7842-7849/13905-13912 D, 6/8 4
8439:16075 -7635 8433-8439/16068-16074 D, 7/7 1
7845:9748 -1902 7838-7840/9747-9749 D, 3/3 3
7974:15496 -7521 7975-7982/15496-15503 D, 8/8 3
8032:16075 -8042 8030-8034/16071-16075 D, 5/5 1
8210:15339 -7128 - NR 2
8213:13991 -5777 8214-8220/13991-13997 D, 7/7 1
8271:8281 -9 NR NR 48
8278:13770 -5491 8272-8277/13763-13768 D, 6/6 1
8304:15055 -6750 8305-8312/15049-15056 D, 6/8 1
8412:15664 -7251 8407-8420/15658-15671 D, 12/14 1
8426:12894 -4467 8416-8420/12890-12894 D, 5/5 1
8468:13446 -4977 8470-8482/13447-13459 D, 13/13 3
8469:13447 -4977 8470-8482/13447-13459 D, 13/13 120
8482:13460 -4977 8470-8482/13447-13459 D, 13/13 5
8517:15421 -6903 8512-8517/15408-15412 D, 5/5 2
8562:13759 -5196 - NR 2
8563:14596 -6032 8558-8563/14588-14593 D, 6/6 1
8570:13236 -4665 8566-8571/13237-13242 I, 5/6 2
8573:15727 -7153 8574-8587/15727-15737 D, 11/14 1
8580:15731 -7150 8581-8587/15731-15737 D, 7/7 1
8582:15957 -7374 - NR 1
8623:15662 -7038 8617-8623/15656-15662 D, 7/7 1
8624:13886 -5261 8617-8624/13877-13885 D, 8/8 1
8631:13513 -4881 8625-8631/13506-13512 D, 7/7 1
8637:16084 -7446 - NR 1
8648:16085 -7436 8637-8648/16073-16084 D, 12/12 7
8707:13723 -5015 - NR 1
8823:15855 -7031 8814-8823/15845-15854 D, 10/10 1
8828:14896 -6067 8829-8838/14896-14095 D, 10/10 2
8992:16072 -7079 - NR 3
9144:13816 -4671 9137-9144/13808-13815 D, 8/8 1
9180:14281 -5100 9172-9175/14289-14292 D, 4/4 1
9191:12909 -3717 9189-9191/12906-12908 D, 3/3 1
9238:15576 -6337 9226-9230/15568-15572 D, 5/5 1
9320:14273 -4952 - - 1
9357:13865 -4507 9345-9361/13851-13868 D, 16/18 1
9515:13055 -3539 9517-9525/13055-13063 D, 7/9 1
9574:12972 -3397 9568-9574/12965-12971 D, 7/7 1
9995:15897 -5901 9998-10006/15895-15903 D, 9/9 2
10050:15076 -5025 10051-10055/15076-15080 M, 5/5 1
10058:14593 -4534 10059-10063/14593-14597 D, 5/5 2
10154:15945 -5790 10138-10144/15944-15950 D, 5/7 3
10169:14435 -4265 10161-10165/14424-14428 D, 5/5 1
10190:13753 -3562 10191-10198/13753-13760 D, 8/8 2
10367:12829 -2461 10365-10367/12826-12828 D, 3/3 1
10370:15570 -5199 10366-10370/15568-15572 D, 5/5 1
10587:15913 -5325 10576-10581/15905-15910 D, 6/6 1
10598:13206 -2607 10587-10592/13192-13197 D, 6/6 1
10665:14856 -4190 10666-10676/14856-14866 D, 10/11 3
10676:14868 -4191 10666-10676/14856-14866 D, 11/11 1
10744:14124 -3379 10745-10754/14124-14133 D, 9/10 1
10941:15362 -4420 10942-10951/15362-15371 D, 10/10 1
10952:15837 -4884 10953-10961/15837-15845 D, 9/9 2
10961:15846 -4884 - NR 1
11232:13980 -2747 11234-11242/13981-13989 D, 9/9 4
11368:15786 -4417 11364-11368/15783-15787 D, 5/5 1
12102:14412 -2309 12103-12112/14412-14421 D, 10/10 4
12103:14414 -2310 12103-12112/14412-14421 D, 10/10 1
12113:14422 -2308 12103-12112/14412-14421 D, 10/10 2
12203:15355 -3151 - NR 1
14786:14791 -4 14783-14786 D, 4/4 1
8630:13581 -4950 - NR 1
7817:14536 -6718 - NR 1
7959:13787 -5827 7954-7959/13781-13786 D, 6/6 1
8476:14812 -6335 8470-8476/14805-14811 D, 7/7 1
7992:15730 -7737 7986-7992/15723-15729 D, 7/7 1
8213:16070 -7856 8207-8212/16071-16076 D, 6/6 1
8034:16076 -8041 8030-8034/16071-16075 D, 5/5 1
8030:16075 -8044 8030-8034/16071-16075 D, 5/5 1
7775:13532 -5756 7769-7775/13525-13531 D, 7/7 1
9486:9502 -15 9480-9486/9495-9501 D, 7/7 1
6019:6025 -5 6015-6019/6020-6024 D, 5/5 1
7989:15435 -7445 - NR 1
10969:14119 -3149 - NR 1
8482:13446 -4963 8470-8482/13447-13459 D, 13/13 1
7409:13687 -6277 - NR 1
9485:13723 -4237 - NR 1
10080:14959 -4878 - - 1
12439:15390 -2950 NR D, 6/6 1
9483:13723 -4239 - - 1
11035:15183 -4147 - - 1
8371:12084 -3712 - NR 1
8095:12393 -4297 - NR 1
8058:12215 -4156 - NR 1
8034:11423 -3388 - NR 1
8032:12300 -4267 8032-8033/12299-12300 D, 2/2 1
7964:12432 -4467 - NR 1
7794:12561 -4766 - NR 1
8421:13564 -5142 - NR 1
8312:13667 -5354 8310-8312/13664-13666 D, 3/3 1
6601:16284 -9682 6592-3501/16274-16283 D, 10/10 1
16153:16308 -154 16165-16165/16308-16319 D, 12/12 1
10943:15372 -4428 10942-10951/15362-15371 D, 10/10 1
297:348 -50 298-306/349-357 D, 9/9 2
6124:15894 -9769 3108-6017/15901-15912 D, 8/10 1
8571:15827 -7255 8563-8571/15827/15835 D, 9/9 1
12112:14422 -2309 12103-12112/14412-14421 D, 10/10 1
10223:12604 -2380 - NR 1
13033:14426 -1392 13025-13033/14417-14425 D, 9/9 1

Note:

Most deletions above are likely somatic mutations. Other somatic variants can be found here. Only deletions with sequenced breakpoints are included. Numerous other reports of mapped deletions have been published without specific sequence data reference.

Reported deletion junctions may be approximate due to the presence identical repeat sequences at the break points. Alternate junctions may be reported in the cited literature due to the inherent ambiguities of the direct repeats.

  • D = direct repeat.
  • I = indirect repeat, homology as specified.
  • NR = no repeats reported.
  • N = number of subjects in which the deletion was detected.

References for the "common" deletion.
Topic revision: r40 - 25 May 2018, ShipingZhang
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