MITOMAP: Reported mtDNA Deletions

Last Edited: Jun 23, 2021

Deletion Junction (nt:nt) Deletion Size (bp) Repeat Location (nt)Sorted descending Repeat Type More Info
10759:15890 -5130 NR NR 1
12439:15390 -2950 NR D, 6/6 1
8271:8281 -9 NR NR 49
10080:14959 -4878 - - 1
10167:15568 -5400 - NR 1
10223:12604 -2380 - NR 1
105:112 -6 - NR 5
10747:15598 -4850 - - 1
10946:15587 -4640 - - 1
10961:15846 -4884 - NR 1
10969:14119 -3149 - NR 1
11035:15183 -4147 - - 1
11262:15375 -4112 - - 1
12112:14412 -2299 - - 1
12113:14421 -2307 - - 1
12203:15355 -3151 - NR 1
12211:15556 -3344 - - 1
12492:15917 -3424 - - 1
13039:15661 -2621 - - 1
5772:12916 -7143 - - 1
5786:13923 -8136 - NR 1
6002:11221 -5218 - - 1
6341:13989 -7647 - - 1
6742:13223 -6480 - - 1
7128:13992 -6863 - - 1
7130:14628 -7497 - - 2
7205:12090 -4884 - - 1
7342:9916 -2573 - NR 1
7409:13687 -6277 - NR 1
7449:15926 -8476 - NR 1
7543:15018 -7474 - NR 1
7697:12364 -4666 - NR 2
7794:12561 -4766 - NR 1
7817:14536 -6718 - NR 1
7964:12432 -4467 - NR 1
7989:15435 -7445 - NR 1
8034:11423 -3388 - NR 1
8058:12215 -4156 - NR 1
8095:12393 -4297 - NR 1
8210:15339 -7128 - NR 2
8371:12084 -3712 - NR 1
8421:13564 -5142 - NR 1
8469:13460 -4936 - NR 1
8543:15672 -7128 - - 1
8562:13759 -5196 - NR 2
8569:14603 -6033 - - 1
8577:12983 -4405 - - 1
8582:15957 -7374 - NR 1
8630:13581 -4950 - NR 1
8637:16084 -7446 - NR 1
8707:13723 -5015 - NR 1
8929:13301 -4371 - - 2
8992:16072 -7079 - NR 3
9320:14273 -4952 - - 1
9431:15423 -5991 - - 1
9449:14550 -5000 - NR 1
9483:13723 -4239 - - 1
9485:13723 -4237 - NR 1
9486:13723 -4236 - - 1
9498:13739 -4240 - - 1
16153:16308 -154 16165-16165/16308-16319 D, 12/12 1
14786:14791 -4 14783-14786 D, 4/4 1
13033:14426 -1392 13025-13033/14417-14425 D, 9/9 1
12102:14412 -2309 12103-12112/14412-14421 D, 10/10 4
12103:14414 -2310 12103-12112/14412-14421 D, 10/10 1
12112:14422 -2309 12103-12112/14412-14421 D, 10/10 1
12113:14422 -2308 12103-12112/14412-14421 D, 10/10 2
11368:15786 -4417 11364-11368/15783-15787 D, 5/5 1
11232:13980 -2747 11234-11242/13981-13989 D, 9/9 4
10952:15837 -4884 10953-10961/15837-15845 D, 9/9 2
10941:15362 -4420 10942-10951/15362-15371 D, 10/10 1
10943:15372 -4428 10942-10951/15362-15371 D, 10/10 1
10744:14124 -3379 10745-10754/14124-14133 D, 9/10 1
10665:14856 -4190 10666-10676/14856-14866 D, 10/11 3
10676:14868 -4191 10666-10676/14856-14866 D, 11/11 2
10598:13206 -2607 10587-10592/13192-13197 D, 6/6 1
10587:15913 -5325 10576-10581/15905-15910 D, 6/6 1
10370:15570 -5199 10366-10370/15568-15572 D, 5/5 1
10367:12829 -2461 10365-10367/12826-12828 D, 3/3 1
10190:13753 -3562 10191-10198/13753-13760 D, 8/8 2
10169:14435 -4265 10161-10165/14424-14428 D, 5/5 1
10154:15945 -5790 10138-10144/15944-15950 D, 5/7 3
10058:14593 -4534 10059-10063/14593-14597 D, 5/5 2
10050:15076 -5025 10051-10055/15076-15080 M, 5/5 1
9995:15897 -5901 9998-10006/15895-15903 D, 9/9 2
9574:12972 -3397 9568-9574/12965-12971 D, 7/7 1
9515:13055 -3539 9517-9525/13055-13063 D, 7/9 1
9486:9502 -15 9480-9486/9495-9501 D, 7/7 1
9357:13865 -4507 9345-9361/13851-13868 D, 16/18 1
9238:15576 -6337 9226-9230/15568-15572 D, 5/5 1
9191:12909 -3717 9189-9191/12906-12908 D, 3/3 1
9180:14281 -5100 9172-9175/14289-14292 D, 4/4 1
9144:13816 -4671 9137-9144/13808-13815 D, 8/8 1
8828:14896 -6067 8829-8838/14896-14095 D, 10/10 2
8823:15855 -7031 8814-8823/15845-15854 D, 10/10 1
8648:16085 -7436 8637-8648/16073-16084 D, 12/12 7
8631:13513 -4881 8625-8631/13506-13512 D, 7/7 1
8623:15662 -7038 8617-8623/15656-15662 D, 7/7 1
8624:13886 -5261 8617-8624/13877-13885 D, 8/8 1
8580:15731 -7150 8581-8587/15731-15737 D, 7/7 1
8573:15727 -7153 8574-8587/15727-15737 D, 11/14 1
8570:13236 -4665 8566-8571/13237-13242 I, 5/6 2
8571:15827 -7255 8563-8571/15827/15835 D, 9/9 1
8563:14596 -6032 8558-8563/14588-14593 D, 6/6 1
8517:15421 -6903 8512-8517/15408-15412 D, 5/5 2
8468:13446 -4977 8470-8482/13447-13459 D, 13/13 3
8469:13447 -4977 8470-8482/13447-13459 D, 13/13 136
8469:14805 -6335 8470-8476/14805-14811 D, 7/7 1
8482:13446 -4963 8470-8482/13447-13459 D, 13/13 1
8482:13460 -4977 8470-8482/13447-13459 D, 13/13 8
8439:16075 -7635 8433-8439/16068-16074 D, 7/7 1
8426:12894 -4467 8416-8420/12890-12894 D, 5/5 1
8412:15664 -7251 8407-8420/15658-15671 D, 12/14 2
8312:13667 -5354 8310-8312/13664-13666 D, 3/3 1
8304:15055 -6750 8305-8312/15049-15056 D, 6/8 1
8278:13770 -5491 8272-8277/13763-13768 D, 6/6 1
8213:13991 -5777 8214-8220/13991-13997 D, 7/7 1
8213:16070 -7856 8207-8212/16071-16076 D, 6/6 1
8032:12300 -4267 8032-8033/12299-12300 D, 2/2 1
8030:16075 -8044 8030-8034/16071-16075 D, 5/5 1
8032:16075 -8042 8030-8034/16071-16075 D, 5/5 1
8034:16076 -8041 8030-8034/16071-16075 D, 5/5 1
7992:15730 -7737 7986-7992/15723-15729 D, 7/7 1
7974:15496 -7521 7975-7982/15496-15503 D, 8/8 3
7959:13787 -5827 7954-7959/13781-13786 D, 6/6 1
7841:13905 -6063 7842-7849/13905-13912 D, 6/8 4
7845:9748 -1902 7838-7840/9747-9749 D, 3/3 3
7829:14135 -6305 7824-7829/14129-14134 D, 6/6 1
7815:15389 -7565 7816-7823/15381-15388 D, 8/8 2
7808:14799 -6990 7809-7814/14799-14804 D, 6/6 1
7777:13794 -6016 7780-7783/13796-13799 D, 4/4 1
7775:13532 -5756 7769-7775/13525-13531 D, 7/7 1
7669:15437 -7767 7662-7669/15429-15436 D, 8/8 2
7635:15440 -7804 7627-7630/15432-15435 D, 4/4 1
7501:14428 -6926 7502-7506/14428-14432 D, 5/5 1
7493:12762 -5268 7491-7493/12759-12761 D, 3/3 1
7491:11004 -3512 7484-7491/10996-11003 D, 8/8 2
7438:13476 -6037 7439/13476 D, 1/1 1
7193:14596 -7402 7169-7173/14609-14613 I, 5/5 1
6601:16284 -9682 6592-3501/16274-16283 D, 10/10 1
6465:14135 -7669 6466-6476/14135-14145 D, 11/11 1
6380:14096 -7715 6369-6374/14099-14104 D, 6/6 1
6330:13994 -7663 6331-6341/13994-14004 D, 11/11 2
6325:13989 -7663 6326-6341/13889-14004 D, 16/17 2
6329:13994 -7664 6325-6340/13989-14005 D, 17/18 1
6238:14103 -7864 6235-6238/14099-14102 D, 4/4 1
6226:13456 -7229 6218-6226/13447-13455 D, 9/9 1
6074:9179 -3104 6080-6083/9181-9184 D, 4/4 1
6075:13799 -7723 6076-6084/13799-13807 D, 9/9 1
6023:14424 -8400 6023/14423 D, 1/1 1
6019:6025 -5 6015-6019/6020-6024 D, 5/5 1
5835:12661 -6825 5836-5843/12666-12673 D, 6/8 1
5793:12767 -6973 5786-5792/12757-12763 D, 6/7 1
4398:14822 -10423 4389-4398/14812-12821 D, 10/10 3
3323:3588 -264 3330-3334/3597-3601 D, 5/5 1
3173:14161 -10987 3166-3173/14154-14161 D, 8/8 1
6124:15894 -9769 3108-6017/15901-15912 D, 8/10 1
1836:5447 -3610 1837-1840/5447-5451 D, 4/4 1
547:4443 -3895 536-548/4430-4442 D, 13/13 7
502:5443 -4939 504-512/5443-5451 D, 8/9 1
470:5152 -4681 471-483/5152-5163 D, 12/13 1
297:348 -50 298-306/349-357 D, 9/9 2

Note:

Most deletions above are likely somatic mutations. Other somatic variants can be found here. Only deletions with sequenced breakpoints are included. Numerous other reports of mapped deletions have been published without specific sequence data reference.

Reported deletion junctions may be approximate due to the presence identical repeat sequences at the break points. Alternate junctions may be reported in the cited literature due to the inherent ambiguities of the direct repeats.

  • D = direct repeat.
  • I = indirect repeat, homology as specified.
  • NR = no repeats reported.
  • N = number of subjects in which the deletion was detected.

References for the "common" deletion.
Topic revision: r512 - 03 Aug 2022, ShipingZhang

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