The Most Common Variants in Mitomap (Frequency >5%)

Mitomap currently has over 10,000 mtDNA variants in its set of 32,059 GenBank sequences.
Shown below are the 96 variants (~1% of the total) which have a frequency higher than 5%.

rCRS Position	Present in ancient root (RSRS)	Allele rCRS → Variant	Allele Count	Frequency in Sequence Set	Percentile
8860	RSRS	m.8860A>G	31527	98.34%	>50%
15326	RSRS	m.15326A>G	31512	98.29%	>50%
750	RSRS	m.750A>G	31410	97.98%	>50%
4769	RSRS	m.4769A>G	31182	97.26%	>50%
1438	RSRS	m.1438A>G	30179	94.14%	>50%
263	RSRS	m.263A>G	29979	93.51%	>50%
7028	RSRS	m.7028C>T	25290	78.89%	>50%
2706	RSRS	m.2706A>G	24784	77.31%	>50%
11719	RSRS	m.11719G>A	24160	75.36%	>50%
14766	RSRS	m.14766C>T	24091	75.15%	>50%
73	RSRS	m.73A>G	23631	73.71%	>50%
16519	RSRS	m.16519T>C	19787	61.72%	>50%
310		m.310T>C	14812	46.20%	25-50%
10398	RSRS	m.10398A>G	14003	43.68%	25-50%
12705	RSRS	m.12705C>T	13381	41.74%	25-50%
16223	RSRS	m.16223C>T	12546	39.13%	25-50%
315		m.315C>CC	10752	33.54%	25-50%
9540	RSRS	m.9540T>C	10553	32.92%	25-50%
10873	RSRS	m.10873T>C	10541	32.88%	25-50%
8701	RSRS	m.8701A>G	10523	32.82%	25-50%
309		m.309C>CCT	9290	28.98%	25-50%
15301		m.15301G>A	8833	27.55%	25-50%
152	RSRS	m.152T>C	8284	25.84%	25-50%
16189	RSRS	m.16189T>C	8147	25.41%	25-50%
489		m.489T>C	7987	24.91%	10-25%
15043		m.15043G>A	7301	22.77%	10-25%
16311	RSRS	m.16311T>C	6624	20.66%	10-25%
195	RSRS	m.195T>C	6574	20.51%	10-25%
10400		m.10400C>T	6545	20.42%	10-25%
14783		m.14783T>C	6504	20.29%	10-25%
146	RSRS	m.146T>C	6314	19.69%	10-25%
16362		m.16362T>C	5411	16.88%	10-25%
3010		m.3010G>A	5046	15.74%	10-25%
12372		m.12372G>A	4519	14.10%	10-25%
11467		m.11467A>G	4213	13.14%	10-25%
12308		m.12308A>G	4193	13.08%	10-25%
16129	RSRS	m.16129G>A	4189	13.07%	10-25%
709		m.709G>A	4118	12.85%	10-25%
16183		m.16183A>C	3920	12.23%	10-25%
150		m.150C>T	3787	11.81%	10-25%
16126		m.16126T>C	3713	11.58%	10-25%
11914	RSRS	m.11914G>A	3534	11.02%	10-25%
16278	RSRS	m.16278C>T	3294	10.27%	10-25%
4216		m.4216T>C	3156	9.84%	5-10%
16294		m.16294C>T	3068	9.57%	5-10%
15452		m.15452C>A	2942	9.18%	5-10%
11251		m.11251A>G	2939	9.17%	5-10%
7521	RSRS	m.7521G>A	2849	8.89%	5-10%
769	RSRS	m.769G>A	2840	8.86%	5-10%
1018	RSRS	m.1018G>A	2832	8.83%	5-10%
13650	RSRS	m.13650C>T	2756	8.60%	5-10%
3594	RSRS	m.3594C>T	2754	8.59%	5-10%
4104	RSRS	m.4104A>G	2732	8.52%	5-10%
7256	RSRS	m.7256C>T	2722	8.49%	5-10%
1811		m.1811A>G	2550	7.95%	5-10%
309		m.309_310insCCT	2539	7.92%	5-10%
13105	RSRS	m.13105A>G	2490	7.77%	5-10%
16261		m.16261C>T	2395	7.47%	5-10%
14798		m.14798T>C	2360	7.36%	5-10%
16172		m.16172T>C	2222	6.93%	5-10%
16217		m.16217T>C	2201	6.87%	5-10%
13708		m.13708G>A	2185	6.82%	5-10%
12007		m.12007G>A	2149	6.70%	5-10%
16304		m.16304T>C	2107	6.57%	5-10%
8251		m.8251G>A	2063	6.44%	5-10%
16298		m.16298T>C	2039	6.36%	5-10%
10238		m.10238T>C	2006	6.26%	5-10%
5460		m.5460G>A	2003	6.25%	5-10%
204		m.204T>C	1946	6.07%	5-10%
16182		m.16182A>C	1908	5.95%	5-10%
16390		m.16390G>A	1865	5.82%	5-10%
10810	RSRS	m.10810T>C	1846	5.76%	5-10%
16319		m.16319G>A	1846	5.76%	5-10%
10688	RSRS	m.10688G>A	1823	5.69%	5-10%
8655	RSRS	m.8655C>T	1819	5.67%	5-10%
16187	RSRS	m.16187C>T	1818	5.67%	5-10%
16093		m.16093T>C	1813	5.66%	5-10%
825	RSRS	m.825T>A	1811	5.65%	5-10%
13506	RSRS	m.13506C>T	1801	5.62%	5-10%
2758	RSRS	m.2758G>A	1788	5.58%	5-10%
7146	RSRS	m.7146A>G	1773	5.53%	5-10%
8468	RSRS	m.8468C>T	1773	5.53%	5-10%
1888		m.1888G>A	1773	5.53%	5-10%
189		m.189A>G	1768	5.51%	5-10%
2885	RSRS	m.2885T>C	1768	5.51%	5-10%
13590		m.13590G>A	1766	5.51%	5-10%
247	RSRS	m.247G>A	1747	5.45%	5-10%
248		m.248delA	1702	5.31%	5-10%
16270		m.16270C>T	1694	5.28%	5-10%
199		m.199T>C	1693	5.28%	5-10%
14905		m.14905G>A	1693	5.28%	5-10%
4883		m.4883C>T	1680	5.24%	5-10%
5178		m.5178C>A	1666	5.20%	5-10%
1719		m.1719G>A	1626	5.07%	5-10%
15607		m.15607A>G	1621	5.06%	5-10%
11299		m.11299T>C	1608	5.02%	5-10%
Other:
4312	RSRS	m.4312C>T	1052	3.28%	<5 %
10664	RSRS	m.10664C>T	1050	3.28%	<5 %
10915	RSRS	m.10915T>C	1278	3.99%	<5 %
13276	RSRS	m.13276A>G	1038	3.24%	<5 %
16230	RSRS	m.16230A>G	1014	3.16%	<5 %