New Tools!

  • Variant Search, aka "Marker Finder"

    Search for variants found at specified frequencies in your choice of haplogroups or lineages - originally developed as a "Marker Finder" but has many uses!

  • Find Sequences for Any Haplogroup

    Retrieve haplogroup-specific GenBank sequences and their variants

  • Variant Info {This tool is being re-worked. Please check back}

    Get info for specified variants - find haplogroup-specific frequencies for both variant and rCRS alleles

Classic Tools


    Haplotype your sequences and get variant information - including frequencies, conservation, references, and more. Input can be sequences in FASTA format, GenBank numbers, or SNVs. The SNV query is especially useful for novel variants.

  • Allele Search

    Search for variants by position - a quick way to pull up info on general population variants and patient variants. For variants not currently listed in Mitomap, use the SNV query function in MITOMASTER, above.

  • Sequences and variants in our current data set

    Retrieve sequence IDs from our current database, from GenBank, and elsewhere. Download a real-time listing of all variants found in Mitomap's set of GenBank sequences.

  • Data download resources

    Download raw data from the Mitomap database.

Topic revision: r6 - 19 Feb 2020, MarieLott

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